Woohoo someone finally replied.
To answer your questions...
My navigation was done in Drupal so it isn't quite like the standard navigation. I know some of it might never catch on, and some of it might, so I just do it the best I can.
I changed TBOWL Comic link to Archive, I did not know thats what people looked for. It helps a lot to not be working in a bubble, which means I need feedback! As to why I don't get a lot of feedback, I have my suspicions...
1-12 are in Prelude, I didn't know what else to name that. Should I put all of the archive in the same place? Some comic writers segment out their comics like that.
What did you think of the comic itself? I'm sorry the navigation was such a pain, I'm completely willing to make it more navigatable as best as I can.